全部论文清单

2024

• 高春辉; 杨宁; 王创; 侯时季; 严建兵; 郑金水; 李锦; 吴尘聊; 蔡鹏#. 有涌现性功能的合成菌群在作物育种上的应用前景. 合成生物学 2024, 5 (1), 144.
• 田箐韵; 师鑫; 李自枭; 陈钧婷; 胡雅涵; 吕达; 吴书凤; 张志鹏; 吴尘聊; 何佳琪; 万艳红; 陈彦昭; 蔡鹏; 徐志辉; 高春辉#. 一种高效、低成本、可扩展的合成菌群构建方法. Bio-101 2024, e2405401.
• Zhu, C.; Wei, W.; An, J.; Hu, J.; Gao, C.; Yang, M. SdrR, a LysR-Type Regulator, Responds to the Mycobacterial Antioxidant Defense. The Journal of Biochemistry 2024, mvae026.
• Wang, P.; Xia, B.; Chen, Z.; Xie, J.; Sun, X.; Tian, Q.; Gao, C.; Xun, W.; Zhang, N.; Zhang, R.; Shen, Q.; Xu, Z#. An Approach to Constructing Multispecies Biofilm Communities from Rhizosphere Soil. JoVE (Journal of Visualized Experiments) 2024, No. 207, e66926.
• Tian, Q.; Shi, X.; Li, Z.; Chen, J.; Hu, Y.; Lv, D.; Wu, S.; Zhang, Z.; Wu, C.; He, J.; Wan, Y.; Chen, Y.; Cai, P.; Xu, Z.; Gao, C.-H.# An Efficient, Low-Cost and Scalable Method for Constructing a Thousand of Synthetic Communities (SynComs). BIO-101 2024, 0 (0).
• Hadayat, A.; Zahir, Z. A.; Cai, P.; Gao, C.-H.# Integrated Application of Synthetic Community Reduces Consumption of Herbicide in Field Phalaris Minor Control. Soil Ecology Letters 2024, 6 (2), 230207.
• Gao, C.-H.; Chen, C.; Akyol, T.; Dusa, A.; Yu, G.; Cao, B.; Cai, P#. ggVennDiagram: Intuitive Venn Diagram Software Extended. iMeta 2024, 3 (1), e177.

2023

• Zhang, M.; Xu, Y.; Xiao, K.-Q.; Gao, C.-H.; Wang, S.; Zhu, D.; Wu, Y.; Huang, Q.; Cai, P#. Characterising Soil Extracellular Polymeric Substances (EPS) by Application of Spectral-Chemometrics and Deconstruction of the Extraction Process. Chemical Geology 2023, 618, 121271.
• Wu, Y.1; Fu, C.1; Peacock, C. L.; Sørensen, S. J.; Redmile-Gordon, M. A.; Xiao, K.-Q.; Gao, C.; Liu, J.; Huang, Q.; Li, Z.; Song, P.; Zhu, Y.; Zhou, J.; Cai, P#. Cooperative Microbial Interactions Drive Spatial Segregation in Porous Environments. Nature Communications 2023, 14 (1), 4226.
• Wei, W.; Jiang, X.; Zhang, L.; Yan, Y.; Yan, J.; Xu, L.; Gao, C.-H.; Yang, M#. Regulation of CRISPR-Associated Genes by Rv1776c (CasR) in Mycobacterium Tuberculosis. Biomolecules 2023, 13 (2), 400.
• Hui Cao; Suying Li; Huan He; Yaoqin Sun; Yichao Wu; Qiaoyun Huang; Peng Cai; Chun-Hui Gao#. Stronger Linkage of Diversity-Carbon Decomposition for Rare Rather than Abundant Bacteria in Woodland Soils. Frontiers in Microbiology 2023, 14.
• Chen, J.; Qu, C.#; Lu, M.; Zhang, M.#; Wu, Y.; Gao, C.; Huang, Q.; Cai, P. Extracellular Polymeric Substances and Mineral Interfacial Reactions Control the Simultaneous Immobilization and Reduction of Arsenic (As (V)). Journal of Hazardous Materials 2023, 456, 131651.

2022

• 渠晨晨; 蔡鹏; 史凯祥; 陈雯莉; 陈今朝; 高春辉; 吴一超; 黄巧云. 生物大分子与重金属互作研究方法与微观机制. 科学通报 2022, 4192–4205.
• 张铭; 蔡鹏#; 吴一超; 高春辉; 刘俊; 黄巧云. 细菌胞外聚合物：基于土壤生态功能的视角. 土壤学报 2022, 59 (2), 308–323.
• Yang, K.; Wang, L.; Cao, X.; Gu, Z.; Zhao, G.; Ran, M.; Yan, Y.; Yan, J.; Xu, L.; Gao, C.#; Yang, M#. The Origin, Function, Distribution, Quantification, and Research Advances of Extracellular DNA. International Journal of Molecular Sciences 2022, 23 (22), 13690.
• Wu, Y.; Redmile-Gordon, M.; Cai, P.; Gao, C.; Huang, Q. Soil Biofilms: Evolving Concepts and Ecological Functions. In Reference Module in Earth Systems and Environmental Sciences; Elsevier, 2022.
• Jing, X.; Wu, Y.; Wang, D.; Qu, C.; Liu, J.; Gao, C.; Mohamed, A.; Huang, Q.; Cai, P.#; Ashry, N. M. Ionic Strength-Dependent Attachment of Pseudomonas Aeruginosa PAO1 on Graphene Oxide Surfaces. Environmental Science & Technology 2022, 56 (23), 16707–16715.

2021

• 高春辉; 张秀梅#; 李丹宜; 蓝灿辉; 赵杰; 翟运开; 赵萌. 中国肠道菌群研究近20年文献大数据分析. 中国医药生物技术 2021, 16 (2), 166–172.
• Yang, M.; Jia, S.-H.; Tao, H.-L.; Zhu, C.; Jia, W.-Z.; Hu, L.-H.; Gao, C.-H. Cd(II)-Binding Transcriptional Regulator Interacts with Isoniazid and Regulates Drug Susceptibility in Mycobacteria. Journal of Biochemistry 2021, 169 (1), 43–53.
• Gao, C.-H.; Yu, G.; Cai, P#. ggVennDiagram: An Intuitive, Easy-to-Use, and Highly Customizable R Package to Generate Venn Diagram. Frontiers in Genetics 2021, 12, 1598.
• Gao, C.-H.; Cao, H.; Ju, F.; Xiao, K.-Q.; Cai, P.#; Wu, Y.; Huang, Q. Emergent Transcriptional Adaption Facilitates Convergent Succession within a Synthetic Community. ISME Communications 2021, 1 (1), 46.
• **Gao, C.-H.**1; Cao, H.1; Cai, P.#; Sørensen, S. J. The Initial Inoculation Ratio Regulates Bacterial Coculture Interactions and Metabolic Capacity. ISME Journal 2021, 15 (1), 29–40.

2020

• 高春辉; 蔡鹏. 土壤病原菌存活与传播机制. In 《土壤有机/生物污染与防控》（徐艳、徐建明主编）; 2020.
• 高春辉; 蓝灿辉. 平衡肠道微生态. In 《活出健康: 免疫力就是好医生》（王贵强，王立祥，张文宏主编）; 2020.
• Sun, X.; Cai, P.#; Sørensen, S. J.; Mortimer, M.; Gao, C.; Huang, Q.; Wang, Y.; Lin, X.; Wu, Y.; Zhu, D.; Chen, R. Interspecific Interactions in Dual-Species Biofilms of Soil Bacteria: Effects of Fertilization Practices. Journal of Soils and Sediments 2020, 20 (3), 1494–1501.
• Peng, N.; Cai, P.#; Mortimer, M.; Wu, Y.; Gao, C.; Huang, Q. The Exopolysaccharide-eDNA Interaction Modulates 3D Architecture of Bacillus Subtilis Biofilm. BMC Microbiology 2020, 20 (1), 115.
• Ouyang, K.; Mortimer, M.; Holden, P. A.; Cai, P.#; Wu, Y.; Gao, C.; Huang, Q. Towards a Better Understanding of Pseudomonas Putida Biofilm Formation in the Presence of ZnO Nanoparticles (NPs): Role of NP Concentration. Environment International 2020, 137, 105485.
• Li, D.; Gao, C.; Zhang, F.; Yang, R.; Lan, C.; Ma, Y.; Wang, J#. Seven Facts and Five Initiatives for Gut Microbiome Research. Protein & Cell 2020, 11 (6), 391–400.
• Jing, X.; Wu, Y.; Shi, L.; Peacock, C. L.; Ashry, N. M.; Gao, C.; Huang, Q.; Cai, P#. Outer Membrane C-Type Cytochromes OmcA and MtrC Play Distinct Roles in Enhancing the Attachment of Shewanella Oneidensis MR-1 Cells to Goethite. Applied and Environmental Microbiology 2020, 86 (23), e01941-20.

2019

• Yang, M.; Zhang, L.; Tao, H.-L.; Sun, Y.-C.; Lou, Z.-Z.; Jia, W.-Z.; Hu, L.-H.; Gao, C.-H.# OxiR Specifically Responds to Isoniazid and Regulates Isoniazid Susceptibility in Mycobacteria. FEMS microbiology letters 2019, 366 (10).
• Wu, Y.; Cai, P.#; Jing, X.; Niu, X.; Ji, D.; Ashry, N. M.; Gao, C.; Huang, Q. Soil Biofilm Formation Enhances Microbial Community Diversity and Metabolic Activity. Environment International 2019, 132, 105116.
• Wang, S.; Redmile-Gordon, M.; Mortimer, M.; Cai, P.#; Wu, Y.; Peacock, C. L.; Gao, C.; Huang, Q. Extraction of Extracellular Polymeric Substances (EPS) from Red Soils (Ultisols). Soil Biology and Biochemistry 2019, 135, 283–285.
• Gao, C.-H.; Zhang, M.; Wu, Y.; Huang, Q.; Cai, P#. Divergent Influence to a Pathogen Invader by Resident Bacteria with Different Social Interactions. Microbial Ecology 2019, 77 (1), 76–86.
• Gao, C.-H.; Wei, W.-P.; Tao, H.-L.; Cai, L.-K.; Jia, W.-Z.; Hu, L.; Yang, M#. Cross-Talk between the Three furA Orthologs in Mycobacterium Smegmatis and the Contribution to Isoniazid Resistance. The Journal of Biochemistry 2019, 166 (3), 237–243.
• Gao, C.-H.; Mortimer, M.; Zhang, M.; Holden, P. A.; Cai, P.#; Wu, S.; Xin, Y.; Wu, Y.; Huang, Q. Impact of Metal Oxide Nanoparticles on in Vitro DNA Amplification. PeerJ 2019, 7, e7228.
• Cai, P.#; Sun, X.; Wu, Y.; Gao, C.; Mortimer, M.; Holden, P. A.; Redmile-Gordon, M.; Huang, Q. Soil Biofilms: Microbial Interactions, Challenges, and Advanced Techniques for Ex-Situ Characterization. Soil Ecology Letters 2019, 1 (3–4), 85–93.

2018

• Wu, Y.; Jing, X.; Gao, C.; Huang, Q.; Cai, P#. Recent Advances in Microbial Electrochemical System for Soil Bioremediation. Chemosphere 2018, 211, 156–163.
• Ouyang, K.; Walker, S. L.; Yu, X.-Y.; Gao, C.-H.; Huang, Q.; Cai, P#. Metabolism, Survival, and Gene Expression of Pseudomonas Putida to Hematite Nanoparticles Mediated by Surface-Bound Humic Acid. Environmental Science-Nano 2018, 5 (3), 682–695.
• Lin, D.; Cai, P.#; Peacock, C. L.; Wu, Y.; Gao, C.; Peng, W.; Huang, Q.; Liang, W. Towards a Better Understanding of the Aggregation Mechanisms of Iron (Hydr)Oxide Nanoparticles Interacting with Extracellular Polymeric Substances: Role of pH and Electrolyte Solution. Science of The Total Environment 2018, 645, 372–379.
• Gao, C.-H.; Cai, P.#; Li, Z.; Wu, Y.; Huang, Q. Co-Culture of Soil Biofilm Isolates Enables the Discovery of Novel Antibiotics. bioRxiv 2018, 353755.
• Cai, P.#; Liu, X.; Ji, D.; Yang, S.; Walker, S. L.; Wu, Y.; Gao, C.; Huang, Q. Impact of Soil Clay Minerals on Growth, Biofilm Formation, and Virulence Gene Expression of Escherichia Coli O157:H7. Environmental Pollution 2018, 243, 953–960.

2017

• 王立亮; 高春辉; 吴一超; 黄巧云; 蔡鹏#. 大肠杆菌表面感应机制研究进展. 浙江大学学报(农业与生命科学版) 2017, 43 (6), 685–690.
• 孙晓洁; 高春辉; 黄巧云; 蔡鹏#. 自然环境中的多物种生物膜:研究方法及社群相互作用. 农业资源与环境学报 2017, No. 01, 6–14.
• Ouyang, K.; Yu, X.-Y.; Zhu, Y.; Gao, C.; Huang, Q.; Cai, P#. Effects of Humic Acid on the Interactions between Zinc Oxide Nanoparticles and Bacterial Biofilms. Environmental Pollution 2017, 231, 1104–1111.
• Ouyang, K.; Dai, K.; Chen, H.; Huang, Q.; Gao, C.; Cai, P#. Metal-Free Inactivation of E. Coli O157:H7 by Fullerene/C3N4 Hybrid under Visible Light Irradiation. Ecotoxicology and Environmental Safety 2017, 136, 40–45.
• Ma, W.; Peng, D.; Walker, S. L.; Cao, B.; Gao, C.-H.; Huang, Q.; Cai, P#. Bacillus Subtilis Biofilm Development in the Presence of Soil Clay Minerals and Iron Oxides. npj Biofilms and Microbiomes 2017, 3 (1), 4.
• Liu, X.; Gao, C.; Ji, D.; Walker, S. L.; Huang, Q.; Cai, P#. Survival of Escherichia Coli O157:H7 in Various Soil Particles: Importance of the Attached Bacterial Phenotype. Biology and Fertility of Soils 2017, 53 (2), 209–219.

2016 & Earlier

• Cao, L.; Gao, C.-H.; Zhu, J.; Zhao, L.; Wu, Q.; Li, M.; Sun, B#. Identification and Functional Study of Type III-A CRISPR-Cas Systems in Clinical Isolates of Staphylococcus Aureus. International Journal of Medical Microbiology 2016, 306 (8), 686–696.
• Wang, L.; Gao, C.; Tang, N.; Hu, S.; Wu, Q#. Identification of Genetic Variations Associated with Epsilon-Poly-Lysine Biosynthesis in Streptomyces Albulus ZPM by Genome Sequencing. Scientific Reports 2015, 5 (1), 9201.
• Zhang, H.; Gao, L.; Zhang, J.; Li, W.; Yang, M.; Zhang, H.; Gao, C.; He, Z.-G#. A Novel marRAB Operon Contributes to the Rifampicin Resistance in Mycobacterium Smegmatis. PloS One 2014, 9 (8), e106016.
• Yang, M.; Gao, C.-H.; Hu, J.; Dong, C.; He, Z.-G#. Characterization of the Interaction between a SirR Family Transcriptional Factor of Mycobacterium Tuberculosis, Encoded by Rv2788, and a Pair of Toxin-Antitoxin Proteins RelJ/K, Encoded by Rv3357 and Rv3358. The FEBS journal 2014, 281 (12), 2726–2737.
• Yang, M.; Gao, C.; Cui, T.; An, J.; He, Z.-G#. A TetR-like Regulator Broadly Affects the Expressions of Diverse Genes in Mycobacterium Smegmatis. Nucleic acids research 2012, 40 (3), 1009–1020.
• Gao, C.; Yang, M.; He, Z.-G#. Characterization of a Novel ArsR-like Regulator Encoded by Rv2034 in Mycobacterium Tuberculosis. PLoS One 2012, 7 (4), e36255.
• Yang, M.; Gao, C.; Wang, Y.; Zhang, H.; He, Z.-G#. Characterization of the Interaction and Cross-Regulation of Three Mycobacterium Tuberculosis RelBE Modules. PloS One 2010, 5 (5), e10672.
• Wang, Y.; Cui, T.; Zhang, C.; Yang, M.; Huang, Y.; Li, W.; Zhang, L.; Gao, C.; He, Y.; Li, Y.; Huang, F.; Zeng, J.; Huang, C.; Yang, Q.; Tian, Y.; Zhao, C.; Chen, H.; Zhang, H.; He, Z.-G#. Global Protein-Protein Interaction Network in the Human Pathogen Mycobacterium Tuberculosis H37Rv. Journal of Proteome Research 2010, 9 (12), 6665–6677.
• Zhang, L.; Zhang, L.; Liu, Y.; Yang, S.; Gao, C.; Gong, H.; Feng, Y.; He, Z.-G#. Archaeal Eukaryote-like Orc1/Cdc6 Initiators Physically Interact with DNA Polymerase B1 and Regulate Its Functions. Proceedings of the National Academy of Sciences of the United States of America 2009, 106 (19), 7792–7797.
• Guo, M.; Feng, H.; Zhang, J.; Wang, W.; Wang, Y.; Li, Y.; Gao, C.; Chen, H.; Feng, Y.; He, Z.-G#. Dissecting Transcription Regulatory Pathways through a New Bacterial One-Hybrid Reporter System. Genome Res 2009, 19 (7), 1301–1308.

1: First author; #: Corresponding author.

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